Scripts and data files used to produce each chapter are linked to below. Some (marked) chunks in the scripts were used only to construct the book (e.g., to compress the output to stay within the margin constraints) and are not shown in the book.

  1. (Very Brief) Introduction to R Basics
  2. Loading Data and Basic Manipulations
  3. Plotting Fundamentals
  4. Age Comparisons
  5. Age-Length Keys
  6. Size Structure
  7. Weight-Length Relationships
  8. Condition
  9. Abundance from Capture-Recapture Data
  10. Abundance from Depletion Data
  11. Mortality Rates
  12. Individual Growth
  13. Recruitment

All scripts and data files are in these ZIP files – scripts.zip and datafiles.zip.